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Longitudinal multiorgan transcriptomic atlas of salt-induced hypertension
Ratnakar Tiwari, Olha Kravtsova, Lashodya V. Dissanayake, Melissa Lowe, Biyang Xu, Vladislav Levchenko, Steven Didik, Ruslan Bohovyk, Daria V. Ilatovskaya, Oleg Palygin, Alexander Staruschenko
Ratnakar Tiwari, Olha Kravtsova, Lashodya V. Dissanayake, Melissa Lowe, Biyang Xu, Vladislav Levchenko, Steven Didik, Ruslan Bohovyk, Daria V. Ilatovskaya, Oleg Palygin, Alexander Staruschenko
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Research Article Inflammation Metabolism Nephrology

Longitudinal multiorgan transcriptomic atlas of salt-induced hypertension

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Abstract

High dietary salt intake elevates blood pressure and drives multiorgan damage. However, the molecular programs underlying progressive organ injury remain poorly defined. Here, we present a longitudinal multiorgan transcriptomic atlas of salt-induced hypertensive injury. We profiled kidney cortex, kidney medulla, heart, and liver across 4 stages, spanning early hypertension to advanced pathology in Dahl salt-sensitive rats. We identified dynamic and tissue-specific molecular trajectories, including a shared early proliferative response that converges on proinflammatory and fibrotic remodeling. Notably, we uncovered compartment-specific renal responses, showing that the cortex and medulla, despite their proximity, follow distinct molecular trajectories during disease progression. We further identified 79 stage- and tissue-specific transcription factors that drive gene expression dynamics in salt-induced hypertensive injury. Integration with human genome-wide association studies revealed conserved pathways in endocrine signaling, ion transport, lipid metabolism, and detoxification, establishing cross-species relevance and highlighting mechanistic targets of clinical importance. Compound-transcriptome analysis revealed stage- and organ-specific therapeutic opportunities, prioritizing kinase and epigenetic modulators as candidates to rebalance maladaptive gene programs. Overall, this study provides a resource for understanding molecular mechanisms from early salt-induced hypertension to tissue-specific injury and underscores the need for precision interventions.

Authors

Ratnakar Tiwari, Olha Kravtsova, Lashodya V. Dissanayake, Melissa Lowe, Biyang Xu, Vladislav Levchenko, Steven Didik, Ruslan Bohovyk, Daria V. Ilatovskaya, Oleg Palygin, Alexander Staruschenko

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Figure 1

Overview of experimental design, data quality, and global transcriptional profiling.

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Overview of experimental design, data quality, and global transcriptiona...
(A) Schematic of the study design and bioinformatics pipeline. Male Dahl SS rats were maintained on a normal-salt (NS) control diet or switched to a high-salt (HS) diet at 9–11 weeks of age to induce hypertension and organ injury. Kidney cortex, kidney medulla, liver, and heart samples were collected from NS controls and HS-fed rats after 7, 14, 21, and 35 days of treatment. RNA was isolated, quality-checked, and sequenced. Reads underwent sample-level quality control, alignment, and quantification. Downstream analyses included variance-stabilizing transformation (VST), differential expression analysis, pathway and upstream regulator enrichment, protein-protein interaction network analysis, genome-wide association study (GWAS) integration, and drug target analyses. (B) Sample-sample Pearson correlation heatmap, annotated by organ and time point. (C) Heatmap of all significantly differentially expressed genes (Padj < 0.05), hierarchically clustered by sample (columns) and gene (rows). Red boxes highlight major coexpression gene modules segregating primarily by organ. (D) UMAP embedding of all 120 samples using VST counts, showing predominant clustering by organ. Dashed circles highlight zoomed-in views of distinct tissue clusters, illustrating separation of NS from HS experimental groups. (E) Radial bar chart summarizing the number of differentially expressed genes (|log2 fold change| ≥ 0.585, equivalent to a fold change ≥ 1.5, Padj < 0.05) in each tissue and time point, illustrating dynamic and tissue-specific transcriptional responses to HS-induced hypertension. CX, cortex; MD, medulla; LV, liver; HR, heart; D7, day 7; D14, day 14; D21, day 21; and D35, day 35 time points. n = 6 male rats per group.

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