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A platform for parallel TCR cloning and testing enables anti-neoantigen tumor immunotherapy
Alexander M. Rowe, Smriti Chaurasia, Wenzhong Wei, Laura García-Diéguez, Katherine Tempro, Johnathon G. Schiebel, Christy Smolak, Alexander Muralles, Daniel Wikenheiser, Kevin Quann, Collin Pirner, Kentin Codispot, Mark J. Shlomchik, Warren D. Shlomchik
Alexander M. Rowe, Smriti Chaurasia, Wenzhong Wei, Laura García-Diéguez, Katherine Tempro, Johnathon G. Schiebel, Christy Smolak, Alexander Muralles, Daniel Wikenheiser, Kevin Quann, Collin Pirner, Kentin Codispot, Mark J. Shlomchik, Warren D. Shlomchik
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Research Article Immunology Oncology

A platform for parallel TCR cloning and testing enables anti-neoantigen tumor immunotherapy

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Abstract

Tumor-infiltrating CD8 cells recognize neoantigens created by tumor-specific mutations. Nonetheless, even after checkpoint inhibitor therapy, most patients’ tumors progress. A deeper understanding of antitumor responses could facilitate development of better therapies. To enable such studies, we applied TCXpress, a high throughput platform that clones fully expressible TCRs from single cells into retroviral or lentiviral vectors without sequencing or gene synthesis, to study TCRs from CD8 cells infiltrating mouse MC38 tumors. We expressed cloned TCRs in reporter cells and interrogated TCR specificity by coculturing them with B6WT3 cells transduced with tandem minigenes encoding predicted neoantigens. We isolated TCRs reactive against epitopes from mutant Rpl18, Adpgk, Psmd2, and Zc3h7b along with self-reactive TCRs that recognized normal B6 and MC38 cells. Importantly, we successfully treated MC38-bearing mice with T cells transduced with anti-Rpl18 TCRs. These results establish a system that could be used to study many types of T cell responses and validate a therapeutic approach that could be tested in the clinic.

Authors

Alexander M. Rowe, Smriti Chaurasia, Wenzhong Wei, Laura García-Diéguez, Katherine Tempro, Johnathon G. Schiebel, Christy Smolak, Alexander Muralles, Daniel Wikenheiser, Kevin Quann, Collin Pirner, Kentin Codispot, Mark J. Shlomchik, Warren D. Shlomchik

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Figure 7

Treatment of MC38 tumors with anti-Rpl18 TCR-transduced T cells.

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Treatment of MC38 tumors with anti-Rpl18 TCR-transduced T cells.
(A) Exp...
(A) Experimental design. MC38 cells were implanted intradermally into CD90.2 B6 mice. Nine days later, mice with tumors more than 2 mm in diameter were sublethally irradiated and injected with CD90.1 TCX 2.0 products transduced with anti-Rpl18mut TCRs A09 or I20 or with the OT-1 TCR, followed by anti-CD40 on day 1. Both A09 and I20 products reduced tumor volumes (B) and the weight of the residual tumor (C) (significant only for A09; data in B and C from 1 representative experiment). The lowest values in C were too small to be reliably weighed and were assigned arbitrary values. (D) Waterfall plots of change in tumor volume from 3 experiments combined. (E and F) Similar numbers of CD8 cells from the 3 products were recovered from the spleen and draining and contralateral LNs. (G) More I20 cells/mg tumor were recovered from the residual tumor bed; only tumors with at least 25 donor CD8 cells were included. (H–J) DexRpl18 binding on A09 cells was greater than I02 in tumor and draining LNs (I and J) but not spleen (H). Changes in tumor volume were compared by calculating the AUC for the tumor volume over time and comparing those values using a Kruskal-Wallis test followed by a Dunn’s multiple-comparison post hoc test. Tumor weights were compared by Mann-Whitney rank-sum tests. The number of regressed tumors among groups was compared using a Fisher’s exact test. All other values were compared using Mann-Whitney rank-sum tests.

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