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A platform for parallel TCR cloning and testing enables anti-neoantigen tumor immunotherapy
Alexander M. Rowe, Smriti Chaurasia, Wenzhong Wei, Laura García-Diéguez, Katherine Tempro, Johnathon G. Schiebel, Christy Smolak, Alexander Muralles, Daniel Wikenheiser, Kevin Quann, Collin Pirner, Kentin Codispot, Mark J. Shlomchik, Warren D. Shlomchik
Alexander M. Rowe, Smriti Chaurasia, Wenzhong Wei, Laura García-Diéguez, Katherine Tempro, Johnathon G. Schiebel, Christy Smolak, Alexander Muralles, Daniel Wikenheiser, Kevin Quann, Collin Pirner, Kentin Codispot, Mark J. Shlomchik, Warren D. Shlomchik
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Research Article Immunology Oncology

A platform for parallel TCR cloning and testing enables anti-neoantigen tumor immunotherapy

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Abstract

Tumor-infiltrating CD8 cells recognize neoantigens created by tumor-specific mutations. Nonetheless, even after checkpoint inhibitor therapy, most patients’ tumors progress. A deeper understanding of antitumor responses could facilitate development of better therapies. To enable such studies, we applied TCXpress, a high throughput platform that clones fully expressible TCRs from single cells into retroviral or lentiviral vectors without sequencing or gene synthesis, to study TCRs from CD8 cells infiltrating mouse MC38 tumors. We expressed cloned TCRs in reporter cells and interrogated TCR specificity by coculturing them with B6WT3 cells transduced with tandem minigenes encoding predicted neoantigens. We isolated TCRs reactive against epitopes from mutant Rpl18, Adpgk, Psmd2, and Zc3h7b along with self-reactive TCRs that recognized normal B6 and MC38 cells. Importantly, we successfully treated MC38-bearing mice with T cells transduced with anti-Rpl18 TCRs. These results establish a system that could be used to study many types of T cell responses and validate a therapeutic approach that could be tested in the clinic.

Authors

Alexander M. Rowe, Smriti Chaurasia, Wenzhong Wei, Laura García-Diéguez, Katherine Tempro, Johnathon G. Schiebel, Christy Smolak, Alexander Muralles, Daniel Wikenheiser, Kevin Quann, Collin Pirner, Kentin Codispot, Mark J. Shlomchik, Warren D. Shlomchik

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Figure 6

Anti-neoantigen TCR-transduced primary T cells kill neoantigen-expressing targets in vitro.

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Anti-neoantigen TCR-transduced primary T cells kill neoantigen-expressin...
(A–F) Primary T cell products expressing anti-Rpl18mut TCRs A09, I20, I02, the anti-OVA TCR OT-1, and an anti-H60 TCR were generated using TCX 2.0. These products were assessed by flow cytometry and in vitro cytotoxicity assays. (A) DexRpl18 binding and TCRβ expression, gated on CD8+ cells. Killing of (B) B6WT3, (C) Rpl18mut-pulsed B6WT3, (D) Rpl18WT-pulsed B6WT3, (E) B6WT3 cells transduced with a minigene construct expressing Rpl18mut and H60 (F) and MC38 cells. (G–K) Primary T cell products expressing the anti-Zc3h7bmut TCRs B06 and F02, the anti-Rpl18mut TCR A09, and the anti-OVA TCR OT-1 were generated using TCX2.0 and analyzed by flow cytometry (G) and in killing assays against (H) B6WT3 cells, (I) B6WT3 cells transduced with minigenes expressing OVA and Zc3h7bmut, or (J) OVA and Zc3h7bWT, or (K) unmanipulated MC38 cells. Significance was calculated comparing the AUCs for each condition using 1-way ANOVA followed by Tukey’s post hoc or Dunnett’s multiple-comparison test.

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