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Real-time genomic profiling of histiocytoses identifies early-kinase domain BRAF alterations while improving treatment outcomes
Lynn H. Lee, Anjelika Gasilina, Jayeeta Roychoudhury, Jason Clark, Francis X. McCormack, Joseph Pressey, Michael S. Grimley, Robert Lorsbach, Siraj Ali, Mark Bailey, Philip Stephens, Jeffrey S. Ross, Vincent A. Miller, Nicolas N. Nassar, Ashish R. Kumar
Lynn H. Lee, Anjelika Gasilina, Jayeeta Roychoudhury, Jason Clark, Francis X. McCormack, Joseph Pressey, Michael S. Grimley, Robert Lorsbach, Siraj Ali, Mark Bailey, Philip Stephens, Jeffrey S. Ross, Vincent A. Miller, Nicolas N. Nassar, Ashish R. Kumar
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Clinical Research and Public Health Oncology

Real-time genomic profiling of histiocytoses identifies early-kinase domain BRAF alterations while improving treatment outcomes

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Abstract

Many patients with histiocytic disorders such as Langerhans cell histiocytosis (LCH) or Erdheim-Chester disease (ECD) have treatment-refractory disease or suffer recurrences. Recent findings of gene mutations in histiocytoses have generated options for targeted therapies. We sought to determine the utility of prospective sequencing of select genes to further characterize mutations and identify targeted therapies for patients with histiocytoses. Biopsies of 72 patients with a variety of histiocytoses underwent comprehensive genomic profiling with targeted DNA and RNA sequencing. Fifteen patients (21%) carried the known BRAF V600E mutation, and 11 patients (15%) carried various mutations in MAP2K1, which we confirm induce constitutive activation of extracellular signal–regulated kinase (ERK) and were sensitive to inhibitors of mitogen-activated protein kinase kinase (MEK, the product of MAP2K1). We also identified recurring ALK rearrangements, and 4 LCH patients with an uncommon in-frame deletion in BRAF (N486_P490del or N486_T491>K), resulting in constitutive activation of ERK with resistance to V600E-specific inhibitors. We subsequently describe clinical cases where patients with aggressive multisystem LCH experience dramatic and sustained responses to monotherapy with either dabrafenib or trametinib. These findings support our conclusion that comprehensive genomic profiling should be regularly applied to these disorders at diagnosis, and can positively impact clinical care.

Authors

Lynn H. Lee, Anjelika Gasilina, Jayeeta Roychoudhury, Jason Clark, Francis X. McCormack, Joseph Pressey, Michael S. Grimley, Robert Lorsbach, Siraj Ali, Mark Bailey, Philip Stephens, Jeffrey S. Ross, Vincent A. Miller, Nicolas N. Nassar, Ashish R. Kumar

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Figure 2

Mutant BRAF is detected in non-Langerhans bone marrow histiocytes and responds to targeted therapy.

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Mutant BRAF is detected in non-Langerhans bone marrow histiocytes and re...
Patient 1: (A) Most of the cellularity in the bone marrow aspirate was comprised of mature-appearing histiocytes, many of which contain hemosiderin. Few hematopoietic cells were present. (B) Frequent hemophagocytic cells were present in the aspirate. (C) Histiocytes filled much of the bone marrow in the biopsy. (D) The bone marrow was diffusely positive for CD163 and negative for CD1a and S100 (not shown). (E) The histiocytes were positive for BRAF V600E using a mutation-specific antibody (pink), whereas other hematopoietic cells in the marrow were BRAF negative (arrows). (F) Positive control BRAF immunohistochemistry on a Langerhans cell histiocytosis skin biopsy containing BRAF V600E; note specific cytoplasmic staining (pink) of the neoplastic histiocytes in the lower one-half of the field. (G) Blood counts and soluble IL-2 receptor levels before and after initiation of dabrafenib by day of admission (x axis). Red asterisks represent the patient’s last required transfusion (blood or platelets) or dose of granulocyte colony-stimulating factor, as in the case of absolute neutrophil count. (H) Coronal view of fluorodeoxyglucose–avid basilar skull lesion with orbital involvement (arrow) is markedly improved on followup PET/CT obtained 2 months later (I) after 6 weeks on dabrafenib. Original magnification, ×400 (A and F), ×1,000 (B), ×200 (C–E).

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