Go to The Journal of Clinical Investigation
  • About
  • Editors
  • Consulting Editors
  • For authors
  • Journal stats
  • Publication ethics
  • Publication alerts by email
  • Transfers
  • Advertising
  • Job board
  • Contact
  • Physician-Scientist Development
  • Current issue
  • Past issues
  • By specialty
    • COVID-19
    • Cardiology
    • Immunology
    • Metabolism
    • Nephrology
    • Oncology
    • Pulmonology
    • All ...
  • Videos
  • Collections
    • In-Press Preview
    • Resource and Technical Advances
    • Clinical Research and Public Health
    • Research Letters
    • Editorials
    • Perspectives
    • Physician-Scientist Development
    • Reviews
    • Top read articles

  • Current issue
  • Past issues
  • Specialties
  • In-Press Preview
  • Resource and Technical Advances
  • Clinical Research and Public Health
  • Research Letters
  • Editorials
  • Perspectives
  • Physician-Scientist Development
  • Reviews
  • Top read articles
  • About
  • Editors
  • Consulting Editors
  • For authors
  • Journal stats
  • Publication ethics
  • Publication alerts by email
  • Transfers
  • Advertising
  • Job board
  • Contact
A flexible, multilayered protein scaffold maintains the slit in between glomerular podocytes
Florian Grahammer, Christoph Wigge, Christoph Schell, Oliver Kretz, Jaakko Patrakka, Simon Schneider, Martin Klose, Julia Kind, Sebastian J. Arnold, Anja Habermann, Ricarda Bräuniger, Markus M. Rinschen, Linus Völker, Andreas Bregenzer, Dennis Rubbenstroth, Melanie Boerries, Dontscho Kerjaschki, Jeffrey H. Miner, Gerd Walz, Thomas Benzing, Alessia Fornoni, Achilleas S. Frangakis, Tobias B. Huber
Florian Grahammer, Christoph Wigge, Christoph Schell, Oliver Kretz, Jaakko Patrakka, Simon Schneider, Martin Klose, Julia Kind, Sebastian J. Arnold, Anja Habermann, Ricarda Bräuniger, Markus M. Rinschen, Linus Völker, Andreas Bregenzer, Dennis Rubbenstroth, Melanie Boerries, Dontscho Kerjaschki, Jeffrey H. Miner, Gerd Walz, Thomas Benzing, Alessia Fornoni, Achilleas S. Frangakis, Tobias B. Huber
View: Text | PDF
Research Article Nephrology

A flexible, multilayered protein scaffold maintains the slit in between glomerular podocytes

  • Text
  • PDF
Abstract

Vertebrate life critically depends on renal filtration and excretion of low molecular weight waste products. This process is controlled by a specialized cell-cell contact between podocyte foot processes: the slit diaphragm (SD). Using a comprehensive set of targeted KO mice of key SD molecules, we provided genetic, functional, and high-resolution ultrastructural data highlighting a concept of a flexible, dynamic, and multilayered architecture of the SD. Our data indicate that the mammalian SD is composed of NEPHRIN and NEPH1 molecules, while NEPH2 and NEPH3 do not participate in podocyte intercellular junction formation. Unexpectedly, homo- and heteromeric NEPHRIN/NEPH1 complexes are rarely observed. Instead, single NEPH1 molecules appear to form the lower part of the junction close to the glomerular basement membrane with a width of 23 nm, while single NEPHRIN molecules form an adjacent junction more apically with a width of 45 nm. In both cases, the molecules are quasiperiodically spaced 7 nm apart. These structural findings, in combination with the flexibility inherent to the repetitive Ig folds of NEPHRIN and NEPH1, indicate that the SD likely represents a highly dynamic cell-cell contact that forms an adjustable, nonclogging barrier within the renal filtration apparatus.

Authors

Florian Grahammer, Christoph Wigge, Christoph Schell, Oliver Kretz, Jaakko Patrakka, Simon Schneider, Martin Klose, Julia Kind, Sebastian J. Arnold, Anja Habermann, Ricarda Bräuniger, Markus M. Rinschen, Linus Völker, Andreas Bregenzer, Dennis Rubbenstroth, Melanie Boerries, Dontscho Kerjaschki, Jeffrey H. Miner, Gerd Walz, Thomas Benzing, Alessia Fornoni, Achilleas S. Frangakis, Tobias B. Huber

×

Figure 3

The SD is a multilayered, bipartite protein scaffold.

Options: View larger image (or click on image) Download as PowerPoint
The SD is a multilayered, bipartite protein scaffold.
(A) CET (cryo-elec...
(A) CET (cryo-electrontomography) of vitreous sections: Tangential computational 2-nm thick section through the base of several foot processes (FP). Individual densities (indicated by the yellow arrowheads) can be seen spanning the area between 2 FP. They are quasiperiodically arranged and have similar thickness, without a dense midline. (B) Subtomogram averaging of these densities reveals 2 predominant classes; the first class has a intermembrane distance of 40 nm (corresponding isosurface representation shown in red). The second has an intermembrane distance of 25 nm (isosurface representation shown in blue). For both entities, quasiperiodic strands with a thickness of 3 nm can be seen spanning the membranes. With increasing distance, the strands appear more disordered, while the shorter ones are rather regularly arranged. A dense midline cannot be discerned. (C) Computational sagittal section (10-nm thick) from a PET tomogram showing the typical appearance of podocytes. Several strands cross the individual FPs with the narrower end of the slit toward the GBM, while the broader opening faces Bowman’s space. The colored arrowheads point to individual strands. Red arrowheads correspond to longer strands, while blue arrowheads mark shorter strands. (D) Transversal computational section (10-nm thick) (in a similar orientation as A) showing the quasiperiodic arrangement of several strands (color code as in C). (E) Surface visualization (3D) seen from Bowman’s capsule showing several FP and hundreds of bridging strands color-coded depending on their length (red 40 nm, blue 25 nm; color variation indicating deviations from these). The histogram of their length variation is shown in Figure 4A. (F) Typical sagittal view of 2 FP, showing 3 layers of 25-nm strands, which we attribute to NEPH1 (blue, and 5 Ig repeats) and one layer of 40-nm strands that we attribute to NEPHRIN (red, and 9 Ig repeats). (G) Transversal view showing a quasiperiodic arrangement of NEPHRIN molecules. (H) Oblique view from Bowman’s capsule onto the molecular arrangement of NEPHRIN and NEPH1.

Copyright © 2026 American Society for Clinical Investigation
ISSN 2379-3708

Sign up for email alerts