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The pleural tuberculosis–associated microenvironment promotes HIV-1 persistence by impairing CD8+ T cell–mediated viral control
Samantha Cronin, Jennifer Simpson, Andrea Pereyra-Casanova, Yuchen Li, Josefina Marín-Rojas, Freja A. Warner van Dijk, Katie Fisher, Daniel J. Buffa, Hafsa Rana, Zoï Vahlas, Joaquina Barros, Mariano Maio, Thomas R. O’Neil, Kirstie M. Bertram, Eunok Lee, Najla Nasr, Andrew N. Harman, Gabriela Turk, Maria Florencia Quiroga, Anthony D. Kelleher, Christel Vérollet, Luciana Balboa, Sarah Palmer, Gabriel Duette
Samantha Cronin, Jennifer Simpson, Andrea Pereyra-Casanova, Yuchen Li, Josefina Marín-Rojas, Freja A. Warner van Dijk, Katie Fisher, Daniel J. Buffa, Hafsa Rana, Zoï Vahlas, Joaquina Barros, Mariano Maio, Thomas R. O’Neil, Kirstie M. Bertram, Eunok Lee, Najla Nasr, Andrew N. Harman, Gabriela Turk, Maria Florencia Quiroga, Anthony D. Kelleher, Christel Vérollet, Luciana Balboa, Sarah Palmer, Gabriel Duette
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Research Article AIDS/HIV Immunology Infectious disease

The pleural tuberculosis–associated microenvironment promotes HIV-1 persistence by impairing CD8+ T cell–mediated viral control

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Abstract

Mycobacterium tuberculosis (Mtb), the causative agent of tuberculosis (TB), is the most common coinfection in people living with HIV-1. This coinfection is associated with accelerated HIV-1 disease progression and reduced survival. However, the immunological and virological mechanisms driving this progression are not completely understood. To address this knowledge gap, using pleural effusion samples from people living with HIV-1 and TB, we investigated how the HIV-1 genetic landscape and the anti–HIV-1 immune response are impacted by a TB-associated microenvironment. Our results revealed an enrichment of genetically intact HIV-1 and impaired CD8+ T cell–mediated antiviral response at this site of HIV-1/Mtb coinfection. Moreover, efficient CD8+ T cell activation was inhibited by lipids present in the TB-associated pleural effusion. These findings indicate that this immune microenvironment induced by TB promotes the persistence of cells infected with replication-competent HIV-1 by creating a niche of reduced antiviral immune pressure, potentially contributing to the worsened clinical outcomes observed in people living with HIV-1 and TB.

Authors

Samantha Cronin, Jennifer Simpson, Andrea Pereyra-Casanova, Yuchen Li, Josefina Marín-Rojas, Freja A. Warner van Dijk, Katie Fisher, Daniel J. Buffa, Hafsa Rana, Zoï Vahlas, Joaquina Barros, Mariano Maio, Thomas R. O’Neil, Kirstie M. Bertram, Eunok Lee, Najla Nasr, Andrew N. Harman, Gabriela Turk, Maria Florencia Quiroga, Anthony D. Kelleher, Christel Vérollet, Luciana Balboa, Sarah Palmer, Gabriel Duette

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Figure 5

TB-PE treatment downmodulates T cell effector functionality.

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TB-PE treatment downmodulates T cell effector functionality.
(A) Schemat...
(A) Schematic of the experimental model used to study the effect of TB-PE on CD8+ T cell functionality. (B) Heatmap showing hierarchical clustering of the top 100 variable genes between TB-PE–treated and control CD8+ T cells stimulated with anti-CD3/CD28 antibodies. (C) Volcano plot of differentially expressed genes (DEGs). (D) Gene set enrichment analysis (GSEA) of DEGs (P < 0.05 and absolute log fold change > 1) comparing TB-PE–treated and control activated CD8+ T cells. Dot plots illustrate the top 10 upregulated and downmodulated enriched Gene Ontology biological process terms. (E) Heatmap of normalized expression of selected genes involved in T cell activation. (F) Gene expression levels of GZMB, IFNG, TNF, IL21, and CD69 across conditions. (G) CD8+ T cells were stimulated with anti-CD3/CD28 antibodies in the presence of TB-PE; cells activated in the absence of PE served as controls. Expression of the activation markers CD69, CD25, and HLA-DR was measured by flow cytometry after 24 hours (CD69, CD25) or 48 hours (HLA-DR). Representative flow plots (left) and quantification of activated cells (right) are shown. (H) Proportions of CD69+ (left) or CD25+ (right) cells stimulated in the presence of an additional TB-PE pool, 3 independent TB-PE samples (red), or HF-PE (gray). Values are relative to the non-PE control condition (blue). Data are shown as mean ± SD. Each dot represents an independent donor. Statistical significance was determined by paired 2-tailed t test or 1-way ANOVA followed by Tukey’s honestly significant difference (HSD) post-test. *P ≤ 0.05, **P ≤ 0.01. (I) HIF-1α expression in activated CD8+ T cells determined by flow cytometry. gMFI, geometric mean fluorescence intensity. Each dot represents an independent donor. Statistical significance was determined by paired 2-tailed t test or 1-way ANOVA followed by Tukey’s HSD post-test. *P ≤ 0.05, **P ≤ 0.01.

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