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Extracellular vesicle miR-93-5p cargo regulates glomerular endothelial cell damage in Alport syndrome
Charmi Dedhia, Valentina Villani, Xiaogang Hou, Paolo Neviani, Geremy Clair, Mohammadreza Kasravi, Cristina Grange, Paolo Cravedi, Paola Aguiari, Velia Alcala, Giuseppe Orlando, Xue-Ying Song, Jonathan E. Zuckerman, Roger E. De Filippo, Stefano Da Sacco, Sargis Sedrakyan, Benedetta Bussolati, Laura Perin
Charmi Dedhia, Valentina Villani, Xiaogang Hou, Paolo Neviani, Geremy Clair, Mohammadreza Kasravi, Cristina Grange, Paolo Cravedi, Paola Aguiari, Velia Alcala, Giuseppe Orlando, Xue-Ying Song, Jonathan E. Zuckerman, Roger E. De Filippo, Stefano Da Sacco, Sargis Sedrakyan, Benedetta Bussolati, Laura Perin
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Research Article Cell biology Nephrology

Extracellular vesicle miR-93-5p cargo regulates glomerular endothelial cell damage in Alport syndrome

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Abstract

Modulation of miRNA expression in glomerular cells is associated with renal disease. Here, we investigated the role of miR-93-5p in mitigating glomerular damage in Alport syndrome and whether the disease-modifying activity of extracellular vesicles from human amniotic fluid stem cells (hAFSC-EVs) is mediated by their miR-93-5p cargo. We identified downregulation of miR-93-5p specifically in glomerular endothelial cells in Alport syndrome along disease progression. Silencing of miR-93-5p in hAFSC-EVs changed the transcriptomic and proteomic profile, regulating EV disease-modifying activity. Compared with naive hAFSC-EVs, silenced hAFSC-EVs did not rescue glomerular endothelial function in vitro and did not restore kidney function in vivo. We established that hAFSC-EVs regulate VEGFR1 and VEGFR2 signaling by miR-93-5p cargo transfer, highlighting that miR-93-5p can restore glomerular endothelial cell biology. Spatial transcriptomics analysis of hAFSC-EV–injected kidneys showed that these EVs can reverse pathways altered during disease progression by stimulating proregenerative processes, specifically in the glomerulus, by regulating miR-93-5p targets. Alteration of glomerular endothelial cell transcriptomics and miR-93-5p targets was also confirmed in biopsies of patients with Alport syndrome using spatial molecular imaging. We demonstrated the critical role of miR-93-5p in glomerular endothelial cells and the capability of hAFSC-EVs to regulate miR-93-5p and its targets in Alport syndrome.

Authors

Charmi Dedhia, Valentina Villani, Xiaogang Hou, Paolo Neviani, Geremy Clair, Mohammadreza Kasravi, Cristina Grange, Paolo Cravedi, Paola Aguiari, Velia Alcala, Giuseppe Orlando, Xue-Ying Song, Jonathan E. Zuckerman, Roger E. De Filippo, Stefano Da Sacco, Sargis Sedrakyan, Benedetta Bussolati, Laura Perin

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Figure 5

Spatial maps of glomeruli of AS mice injected with EVs.

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Spatial maps of glomeruli of AS mice injected with EVs.
(A) Venn diagram...
(A) Venn diagram displaying significantly upregulated genes in glomerular spots of treated 5mAS vs. WT at 4m (left) and 5mAS vs. WT 4m (right). Treated 5m mice received hAFSC-EVs at 2.5m and sacrificed at 5m. Significantly regulated genes (|log2FC| > 0.25; adj. P < 0.05). (B) Glomerular cluster (cluster 7 from the integrated samples in Figure 4) was filtered, reclustered, and subdivided into 4 different subclusters by unsupervised clustering. Cluster annotations are shown on UMAP. (C) Distribution of samples across glomerular subclusters. Percentage of glomerular spots (x axis) of each sample (magenta, WT 4m; yellow, 2mAS; gray, 5mAS; brown, treated 5mAS) per subcluster identified (y axis). (D) Volcano plot of DEGs in treated 5mAS vs. 5mAS within subcluster 4 of immune cells (|log2FC| > 0.25; adj. P < 0.05). (E) Enriched Gene Ontology (GO) biological processes obtained from significantly upregulated genes in glomerular spots of treated vs. untreated 5mAS mice, for subclusters sc1 (blue), sc2 (orange), sc3 (green), and sc4 (red). (F) Proteinuria assessed by albumin-to-creatinine ratio, in AS mice following injection of either EVs (blue, n = 16) or KD_EVs (red, n = 11) at 2.5m. Untreated AS mice (black, n = 15), and WT mice (black, n = 5) served as controls. (G) Survival curve of AS mice, untreated (black, n = 15) or treated with EVs (blue, n = 16) or KD-EVs (red, n = 11). (H) Densitometric analysis for p-VEGFR2/VEGFR2 ratio (250 kDa and 192 kDa, respectively) in glomeruli of indicated groups. (I) Densitometric analysis for VEGFR1 (150 kDa) in glomeruli of of indicated groups; normalized to β-actin (42 kDa). Western blot bands are shown. Data are reported as mean ± SEM. *P < 0.05; **P < 0.01; ***P < 0.001 by 1-way ANOVA with uncorrected Fisher’s LSD test for proteinuria (F, H, and I) or log-rank (Mantel-Cox) test for survival curves (G).

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