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Lentivirus-mediated gene therapy corrects ribosomal biogenesis and shows promise for Diamond Blackfan anemia
Yari Giménez, Manuel Palacios, Rebeca Sánchez-Domínguez, Christiane Zorbas, Jorge Peral, Alexander Puzik, Laura Ugalde, Omaira Alberquilla, Mariela Villanueva, Paula Río, Eva Gálvez, Lydie Da Costa, Marion Strullu, Albert Catala, Anna Ruiz-Llobet, Jose Carlos Segovia, Julián Sevilla, Brigitte Strahm, Charlotte M. Niemeyer, Cristina Beléndez, Thierry Leblanc, Denis L.J. Lafontaine, Juan Bueren, Susana Navarro
Yari Giménez, Manuel Palacios, Rebeca Sánchez-Domínguez, Christiane Zorbas, Jorge Peral, Alexander Puzik, Laura Ugalde, Omaira Alberquilla, Mariela Villanueva, Paula Río, Eva Gálvez, Lydie Da Costa, Marion Strullu, Albert Catala, Anna Ruiz-Llobet, Jose Carlos Segovia, Julián Sevilla, Brigitte Strahm, Charlotte M. Niemeyer, Cristina Beléndez, Thierry Leblanc, Denis L.J. Lafontaine, Juan Bueren, Susana Navarro
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Research Article Hematology Therapeutics

Lentivirus-mediated gene therapy corrects ribosomal biogenesis and shows promise for Diamond Blackfan anemia

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Abstract

This study lays the groundwork for future lentivirus-mediated gene therapy in patients with Diamond Blackfan anemia (DBA) caused by mutations in ribosomal protein S19 (RPS19), showing evidence of a new safe and effective therapy. The data show that, unlike patients with Fanconi anemia (FA), the hematopoietic stem cell (HSC) reservoir of patients with DBA was not significantly reduced, suggesting that collection of these cells should not constitute a remarkable restriction for DBA gene therapy. Subsequently, 2 clinically applicable lentiviral vectors were developed. In the former lentiviral vector, PGK.CoRPS19 LV, a codon-optimized version of RPS19 was driven by the phosphoglycerate kinase promoter (PGK) already used in different gene therapy trials, including FA gene therapy. In the latter one, EF1α.CoRPS19 LV, RPS19 expression was driven by the elongation factor alpha short promoter, EF1α(s). Preclinical experiments showed that transduction of DBA patient CD34+ cells with the PGK.CoRPS19 LV restored erythroid differentiation, and demonstrated the long-term repopulating properties of corrected DBA CD34+ cells, providing evidence of improved erythroid maturation. Concomitantly, long-term restoration of ribosomal biogenesis was verified using a potentially novel method applicable to patients’ blood cells, based on ribosomal RNA methylation analyses. Finally, in vivo safety studies and proviral insertion site analyses showed that lentivirus-mediated gene therapy was nontoxic.

Authors

Yari Giménez, Manuel Palacios, Rebeca Sánchez-Domínguez, Christiane Zorbas, Jorge Peral, Alexander Puzik, Laura Ugalde, Omaira Alberquilla, Mariela Villanueva, Paula Río, Eva Gálvez, Lydie Da Costa, Marion Strullu, Albert Catala, Anna Ruiz-Llobet, Jose Carlos Segovia, Julián Sevilla, Brigitte Strahm, Charlotte M. Niemeyer, Cristina Beléndez, Thierry Leblanc, Denis L.J. Lafontaine, Juan Bueren, Susana Navarro

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Figure 1

Analysis of the HSPC content and composition of bone marrow samples from patients with DBA.

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Analysis of the HSPC content and composition of bone marrow samples from...
(A) Cellularity (WBCs/µL), CD34+ cell percentage, and CD34+ cell concentration (cells/µL) in bone marrow (BM) from HDs, patients with FA, and patients with DBA. (B) Frequency of hematopoietic stem cells (HSC, Lin–CD34+CD38–CD90+CD45RA–), multipotent progenitors (MPP, CD34+CD38–Thy-1–CD45RA–Flt3+CD7–CD10–), intermediate hematopoietic progenitors such as common myeloid progenitors (CMP, CD34+CD38+Thy-1–CD45RA–Flt3+CD7–CD10–), megakaryocytic and erythroid progenitors (MEP, CD34+CD38+Thy-1–CD45RA–Flt3–CD7–CD10–), granulocyte–monocyte progenitors (GMP, CD34+CD38+Thy-1–CD45RA+Flt3+CD7–CD10–), multilymphoid progenitors (MLP, CD34+CD38–Thy-1loCD45RA–Flt3+CD7–/+CD10–), and B-NKs (CD34+CD38–Thy-1loCD45RA–Flt3+CD7–/+CD10+). (C) CD71+CD235a+ and CD71–CD235a+ proerythroblast content (cells/μL) of BM from DBA patients compared with HDs. (D) CD41+CD42+ frequency and content of BM from patients with DBA compared with HDs. (E) Number of granulocyte-macrophage progenitor colony-forming units (CFU-GMs) per 105 seeded mononuclear cells (MNCs) and number of burst-forming unit-erythroid progenitors (BFU-Es) per 105 seeded MNCs. (F) Left: Percentage of human CD45+ (hCD45+) cells found in mouse BM at 3 time points posttransplantation (30, 60, and 90 days). Right: differentiation to the different lineages (CD33+: myeloid, CD19+: lymphoid, and CD34+: HSCs). The graphs show the median and interquartile range along with the 90th and 10th percentiles. In both graphs, each symbol represents 1 patient. The degree of statistical significance was determined by multiple-comparison Kruskal-Wallis test (P value; * ≤ 0.017; ** ≤ 0.003; *** ≤ 0.0003; **** ≤ 0.00003) for figures A and E. The degree of significance was determined with the 2-tailed Mann-Whitney test (P value; * ≤ 0.05; ** ≤ 0.01; *** ≤ 0.001; **** ≤ 0.0001) for B–D. Patients with DBA marked with darker dots were under corticosteroid treatment.

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