Go to The Journal of Clinical Investigation
  • About
  • Editors
  • Consulting Editors
  • For authors
  • Journal stats
  • Publication ethics
  • Publication alerts by email
  • Transfers
  • Advertising
  • Job board
  • Contact
  • Physician-Scientist Development
  • Current issue
  • Past issues
  • By specialty
    • COVID-19
    • Cardiology
    • Immunology
    • Metabolism
    • Nephrology
    • Oncology
    • Pulmonology
    • All ...
  • Videos
  • Collections
    • In-Press Preview
    • Resource and Technical Advances
    • Clinical Research and Public Health
    • Research Letters
    • Editorials
    • Perspectives
    • Physician-Scientist Development
    • Reviews
    • Top read articles

  • Current issue
  • Past issues
  • Specialties
  • In-Press Preview
  • Resource and Technical Advances
  • Clinical Research and Public Health
  • Research Letters
  • Editorials
  • Perspectives
  • Physician-Scientist Development
  • Reviews
  • Top read articles
  • About
  • Editors
  • Consulting Editors
  • For authors
  • Journal stats
  • Publication ethics
  • Publication alerts by email
  • Transfers
  • Advertising
  • Job board
  • Contact
Proteogenomic identification of an immunogenic antigen derived from human endogenous retrovirus in renal cell carcinoma
Shin Kobayashi, Serina Tokita, Keigo Moniwa, Katsuyuki Kitahara, Hiromichi Iuchi, Kazuhiko Matsuo, Hidehiro Kakizaki, Takayuki Kanaseki, Toshihiko Torigoe
Shin Kobayashi, Serina Tokita, Keigo Moniwa, Katsuyuki Kitahara, Hiromichi Iuchi, Kazuhiko Matsuo, Hidehiro Kakizaki, Takayuki Kanaseki, Toshihiko Torigoe
View: Text | PDF
Research Article Immunology Oncology

Proteogenomic identification of an immunogenic antigen derived from human endogenous retrovirus in renal cell carcinoma

  • Text
  • PDF
Abstract

CD8+ T cells can recognize tumor antigens displayed by HLA class I molecules and eliminate tumor cells. Despite their low tumor mutation burden, immune checkpoint blockade (ICB) is often beneficial in patients with renal cell carcinoma (RCC). Here, using a proteogenomic approach, we directly and comprehensively explored the HLA class I–presenting peptidome of RCC tissues and demonstrated that the immunopeptidomes contain a small subset of peptides derived from human endogenous retroviruses (hERV). A comparison between tumor and normal kidney tissues revealed tumor-associated hERV antigens, one of which was immunogenic and recognized by host tumor-infiltrating lymphocytes (TIL). Stimulation with the hERV antigen induced reactive CD8+ T cells in healthy donor–derived (HD-derived) peripheral blood mononuclear cells (PBMC). These results highlight the presence of antitumor CD8+ T cell surveillance against hERV3895 antigens, suggesting their clinical applications in patients with RCC.

Authors

Shin Kobayashi, Serina Tokita, Keigo Moniwa, Katsuyuki Kitahara, Hiromichi Iuchi, Kazuhiko Matsuo, Hidehiro Kakizaki, Takayuki Kanaseki, Toshihiko Torigoe

×

Figure 3

Search of the immunopeptidome for tumor-associated hERV antigens.

Options: View larger image (or click on image) Download as PowerPoint
Search of the immunopeptidome for tumor-associated hERV antigens.
(A) Ve...
(A) Venn diagram showing the number of hERV-derived peptides exclusive to RCC17 tumor and normal tissues. (B) Differential gene expression of hERVs in tumor and normal tissues. hERVs encoding peptides exclusive to the tumor are shown in red. (C) Gene expression of the 4 hERV transcripts across 3 RCC tissues. Each fold change (FC) indicates the expression ratio (tumor/normal) in RCC17. (D) hERV3895 expression across normal tissues measured by qPCR (y axis, FC relative to RCC21 normal tissue). (E) Schematic representation of the hERV3895 transcript. Each black box indicates a potential ORF encompassed with ATG and a stop codon. The red box indicates the positions of sequences encoding LF9 (top). Amino acid sequences translated from the ORF encoding LF9 are also shown (bottom). LF9 is shown in red. (F) MS/MS spectra and corresponding b- and y-fragment ions of endogenous and synthetic LF9 peptides.

Copyright © 2026 American Society for Clinical Investigation
ISSN 2379-3708

Sign up for email alerts