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Long noncoding RNA uc.230/CUG-binding protein 1 axis sustains intestinal epithelial homeostasis and response to tissue injury
Ting-Xi Yu, Sudhakar Kalakonda, Xiangzheng Liu, Naomi Han, Hee K. Chung, Lan Xiao, Jaladanki N. Rao, Tong-Chuan He, Jean-Pierre Raufman, Jian-Ying Wang
Ting-Xi Yu, Sudhakar Kalakonda, Xiangzheng Liu, Naomi Han, Hee K. Chung, Lan Xiao, Jaladanki N. Rao, Tong-Chuan He, Jean-Pierre Raufman, Jian-Ying Wang
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Research Article Gastroenterology

Long noncoding RNA uc.230/CUG-binding protein 1 axis sustains intestinal epithelial homeostasis and response to tissue injury

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Abstract

Intestinal epithelial integrity is commonly disrupted in patients with critical disorders, but the exact underlying mechanisms are unclear. Long noncoding RNAs transcribed from ultraconserved regions (T-UCRs) control different cell functions and are involved in pathologies. Here, we investigated the role of T-UCRs in intestinal epithelial homeostasis and identified T-UCR uc.230 as a major regulator of epithelial renewal, apoptosis, and barrier function. Compared with controls, intestinal mucosal tissues from patients with ulcerative colitis and from mice with colitis or fasted for 48 hours had increased levels of uc.230. Silencing uc.230 inhibited the growth of intestinal epithelial cells (IECs) and organoids and caused epithelial barrier dysfunction. Silencing uc.230 also increased IEC vulnerability to apoptosis, whereas increasing uc.230 levels protected IECs against cell death. In mice with colitis, reduced uc.230 levels enhanced mucosal inflammatory injury and delayed recovery. Mechanistic studies revealed that uc.230 increased CUG-binding protein 1 (CUGBP1) by acting as a natural decoy RNA for miR-503, which interacts with Cugbp1 mRNA and represses its translation. These findings indicate that uc.230 sustains intestinal mucosal homeostasis by promoting epithelial renewal and barrier function and that it protects IECs against apoptosis by serving as a natural sponge for miR-503, thereby preserving CUGBP1 expression.

Authors

Ting-Xi Yu, Sudhakar Kalakonda, Xiangzheng Liu, Naomi Han, Hee K. Chung, Lan Xiao, Jaladanki N. Rao, Tong-Chuan He, Jean-Pierre Raufman, Jian-Ying Wang

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Figure 4

Ectopically overexpressed uc.230 protects IECs against apoptosis.

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Ectopically overexpressed uc.230 protects IECs against apoptosis.
(A) Pe...
(A) Percentages of apoptotic cells after uc.230 overexpression. Cells were treated with TNFα/CHX 48 hours after transfection with uc.230 expression vector or control emptying vector, and apoptosis was measured 4 hours thereafter. Values are means ± SEM (n = 5). *P < 0.05 compared with control vector. (B) Images of TUNEL staining in cells described in A. Experiments were repeated 3 separate times and showed similar results. Original magnification, ×200. (C) Levels of cleaved caspase-3 in cells described in A. (D) Cleaved caspase-3 staining in intestinal organoids after uc.230 overexpression. Organoids were exposed to TNFα/CHX 48 hours after transfection with uc.230 expression vector or control vector, and apoptotic cell death was examined 3 hours thereafter. Scale bars: 100 μm. (E) Quantitative data of cleaved caspase-3+ cells in organoids described in D. Values are means ± SEM (n = 5). *P < 0.05 compared with control vector. (F) Changes in levels of cleaved caspase-3 in intestinal organoids treated as described in D. In A and E, statistical significance was analyzed using unpaired, 2-tailed Student’s t tests.

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