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p300 suppresses the transition of myelodysplastic syndromes to acute myeloid leukemia
Na Man, Gloria Mas, Daniel L. Karl, Jun Sun, Fan Liu, Qin Yang, Miguel Torres-Martin, Hidehiro Itonaga, Concepcion Martinez, Shi Chen, Ye Xu, Stephanie Duffort, Pierre-Jacques Hamard, Chuan Chen, Beth E. Zucconi, Luisa Cimmino, Feng-Chun Yang, Mingjiang Xu, Philip A. Cole, Maria E. Figueroa, Stephen D. Nimer
Na Man, Gloria Mas, Daniel L. Karl, Jun Sun, Fan Liu, Qin Yang, Miguel Torres-Martin, Hidehiro Itonaga, Concepcion Martinez, Shi Chen, Ye Xu, Stephanie Duffort, Pierre-Jacques Hamard, Chuan Chen, Beth E. Zucconi, Luisa Cimmino, Feng-Chun Yang, Mingjiang Xu, Philip A. Cole, Maria E. Figueroa, Stephen D. Nimer
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Research Article Hematology

p300 suppresses the transition of myelodysplastic syndromes to acute myeloid leukemia

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Abstract

Myelodysplastic syndromes (MDS) are hematopoietic stem and progenitor cell (HSPC) malignancies characterized by ineffective hematopoiesis and an increased risk of leukemia transformation. Epigenetic regulators are recurrently mutated in MDS, directly implicating epigenetic dysregulation in MDS pathogenesis. Here, we identified a tumor suppressor role of the acetyltransferase p300 in clinically relevant MDS models driven by mutations in the epigenetic regulators TET2, ASXL1, and SRSF2. The loss of p300 enhanced the proliferation and self-renewal capacity of Tet2-deficient HSPCs, resulting in an increased HSPC pool and leukemogenicity in primary and transplantation mouse models. Mechanistically, the loss of p300 in Tet2-deficient HSPCs altered enhancer accessibility and the expression of genes associated with differentiation, proliferation, and leukemia development. Particularly, p300 loss led to an increased expression of Myb, and the depletion of Myb attenuated the proliferation of HSPCs and improved the survival of leukemia-bearing mice. Additionally, we show that chemical inhibition of p300 acetyltransferase activity phenocopied Ep300 deletion in Tet2-deficient HSPCs, whereas activation of p300 activity with a small molecule impaired the self-renewal and leukemogenicity of Tet2-deficient cells. This suggests a potential therapeutic application of p300 activators in the treatment of MDS with TET2 inactivating mutations.

Authors

Na Man, Gloria Mas, Daniel L. Karl, Jun Sun, Fan Liu, Qin Yang, Miguel Torres-Martin, Hidehiro Itonaga, Concepcion Martinez, Shi Chen, Ye Xu, Stephanie Duffort, Pierre-Jacques Hamard, Chuan Chen, Beth E. Zucconi, Luisa Cimmino, Feng-Chun Yang, Mingjiang Xu, Philip A. Cole, Maria E. Figueroa, Stephen D. Nimer

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Figure 3

Loss of p300 rewires the epigenetic landscape and reprograms the transcriptome of Tet2-null HSPCs.

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Loss of p300 rewires the epigenetic landscape and reprograms the transcr...
(A) KEGG pathway enrichment analysis of the genes annotated to the H3K27Ac peaks lost in Ep300Δ/ΔTet2–/– Lin– cells compared with Tet2–/– Lin– cells. (B) HOMER motif analysis of enhancers that lost in Ep300Δ/ΔTet2–/– Lin– cells compared with Tet2–/– Lin– cells. (C) Enrichr-Hallmarks analysis of the genes annotated to the altered ATAC-Seq peaks in Ep300Δ/ΔTet2–/– LSK cells compared with Tet2–/– LSK cells. (D) Volcano plot showing the differential transcription factor binding obtained from diffTF analysis of ATAC-Seq data in Ep300Δ/ΔTet2–/– HSPCs compared with Tet2–/– HSPCs. Transcription factors that pass the significance threshold (adjusted P value < 0.01 and weighted mean difference greater that 0.03) are shown. (E) GSEA Hallmarks analysis of DE genes between Ep300Δ/ΔTet2–/– and Tet2–/– HSPCs. (F) Overlap of the downregulated genes and the genes annotated to lost enhancers in Ep300Δ/ΔTet2–/– cells compared with Tet2–/– cells. (G) Enrichr-KEGG analysis of the 284 genes identified in F. (H) Quantitative RT-PCR assays showing the expression of Dntt and Notch1 in HSPCs from Ep300Δ/ΔTet2–/– and Tet2–/– mice. (I) The UCSC genome browser tracks showing the ChIP-Seq and ATAC-Seq signal at Notch1 gene locus. Highlighted in blue are 2 intronic enhancers of Notch1. Both tracks for each mark are adjusted to the same scale. P values were determined using 2-tailed Student’s t tests. HSPCs, hematopoietic stem and progenitor cells; LSK, lineage– Sca1+c-Kit+; GSEA, Gene Set Enrichment Analysis; DE, differentially expressed.

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