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Activation of CAR and non-CAR T cells within the tumor microenvironment following CAR T cell therapy
Pei-Hsuan Chen, Mikel Lipschitz, Jason L. Weirather, Caron Jacobson, Philippe Armand, Kyle Wright, F. Stephen Hodi, Zachary J. Roberts, Stuart A. Sievers, John Rossi, Adrian Bot, William Go, Scott J. Rodig
Pei-Hsuan Chen, Mikel Lipschitz, Jason L. Weirather, Caron Jacobson, Philippe Armand, Kyle Wright, F. Stephen Hodi, Zachary J. Roberts, Stuart A. Sievers, John Rossi, Adrian Bot, William Go, Scott J. Rodig
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Research Article Oncology

Activation of CAR and non-CAR T cells within the tumor microenvironment following CAR T cell therapy

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Abstract

Mechanisms of chimeric antigen receptor (CAR) T cell–mediated antitumor immunity and toxicity remain poorly characterized because few studies examine the intact tumor microenvironment (TME) following CAR T cell infusion. Axicabtagene ciloleucel is an autologous anti-CD19 CAR T cell therapy approved for patients with large B cell lymphoma. We devised multiplex immunostaining and ISH assays to interrogate CAR T cells and other immune cell infiltrates in biopsies of diffuse large B cell lymphoma following axicabtagene ciloleucel infusion. We found that a majority of intratumoral CAR T cells expressed markers of T cell activation but, unexpectedly, constituted ≤5% of all T cells within the TME 5 days or more after therapy. Large numbers of T cells without CAR were also activated within the TME after axicabtagene ciloleucel infusion; these cells were positive for Ki-67, IFN-γ, granzyme B (GzmB), and/or PD-1 and were found at the highest levels in biopsies with CAR T cells. Additionally, non-CAR immune cells were the exclusive source of IL-6, a cytokine associated with cytokine release syndrome, and were found at their highest numbers in biopsies with CAR T cells. These data suggest that intratumoral CAR T cells are associated with non-CAR immune cell activation within the TME with both beneficial and pathological effects.

Authors

Pei-Hsuan Chen, Mikel Lipschitz, Jason L. Weirather, Caron Jacobson, Philippe Armand, Kyle Wright, F. Stephen Hodi, Zachary J. Roberts, Stuart A. Sievers, John Rossi, Adrian Bot, William Go, Scott J. Rodig

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Figure 2

CAR and non-CAR T cells within the diffuse large B cell lymphoma microenvironment after axicabtagene ciloleucel.

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CAR and non-CAR T cells within the diffuse large B cell lymphoma microen...
(A) Representative images of immunofluorescence (IF) staining with a monoclonal anti-CAR antibody (clone KIP1, green) and DAPI (for cell nuclei, blue) performed on FFPE cells previously transduced (left, main) or untransduced (left, inset) with retrovirus encoding the CAR transgene. Multiplex IF staining a biopsy sample obtained 7 days after axicabtagene ciloleucel infusion (right) with anti-CAR (KIP1 antibody, green), anti-CD3 (white), and DAPI (blue) showing CAR expression on a subset of T cells. (B) The number of days after axicabtagene ciloleucel infusion a biopsy was obtained and the percentage of T cells expressing the CAR antigen, as detected with the KIP1 antibody. (C) Representative images of IF staining with a monoclonal anti-CAR antibody (clone KIP3, red) and DAPI (blue) performed on FFPE cells previously transduced (left, main) or untransduced (left, inset) with retrovirus encoding the CAR transgene. Multiplex IF staining a biopsy sample obtained 7 days after axicabtagene ciloleucel infusion (right) with anti-CAR (KIP3 antibody, red), anti-CD3 (white), and DAPI (blue) and showing CAR expression on a subset of T cells. (D) The number of days after axicabtagene ciloleucel infusion a biopsy was obtained and the percentage of T cells expressing the CAR antigen, as detected with the KIP3 antibody. (E) Representative images of ISH with an antisense probe for the CAR transcript (red) and hematoxylin staining (for nuclei, blue) performed on FFPE cells previously transduced (left, main) or untransduced (left, inset) with retrovirus encoding the CAR transgene. ISH performed on a biopsy sample obtained 7 days after axicabtagene ciloleucel infusion (right) with anti-CAR (red) and with hematoxylin staining (blue) showing CAR transcripts in a subset of cells. (F) The number of days after axicabtagene ciloleucel infusion a biopsy was obtained and the percentage of cells expressing CAR transcript as detected by ISH. Original magnification, ×200 (A, C, and E, including insets).

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